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Abstract The muskox (Ovibos moschatus), an integral component and iconic symbol of arctic biocultural diversity, is under threat by rapid environmental disruptions from climate change. We report a chromosomal-level haploid genome assembly of a muskox from Banks Island in the Canadian Arctic Archipelago. The assembly has a contig N50 of 44.7 Mbp, a scaffold N50 of 112.3 Mbp, a complete representation (100%) of the BUSCO v5.2.2 set of 9225 mammalian marker genes and is anchored to the 24 chromosomes of the muskox. Tabulation of heterozygous single nucleotide variants in our specimen revealed a very low level of genetic diversity, which is consistent with recent reports of the muskox having the lowest genome-wide heterozygosity among the ungulates. While muskox populations are currently showing no overt signs of inbreeding depression, environmental disruptions are expected to strain the genomic resilience of the species. One notable impact of rapid climate change in the Arctic is the spread of emerging infectious and parasitic diseases in the muskox, as exemplified by the range expansion of muskox lungworms, and the recent fatal outbreaks ofErysipelothrix rhusiopathiae, a pathogen normally associated with domestic swine and poultry. As a genomics resource for conservation management of the muskox against existing and emerging disease modalities, we annotated the genes of the major histocompatibility complex on chromosome 2 and performed an initial assessment of the genetic diversity of this complex. This resource is further supported by the annotation of the principal genes of the innate immunity system, genes that are rapidly evolving and under positive selection in the muskox, genes associated with environmental adaptations, and the genes associated with socioeconomic benefits for Arctic communities such as wool (qiviut) attributes. These annotations will benefit muskox management and conservation. 

Abstract Warming temperatures and advancing spring are affecting annual snow and ice cycles, as well as plant phenology, across the Arctic and boreal regions. These changes may be linked to observed population declines in wildlife, including barren‐ground caribou (Rangifer tarandus), a key species of Arctic environments. We quantified how barren‐ground caribou, characteristically both gregarious and migratory, synchronize births in time and aggregate births in space and investigated how these tactics are influenced by variable weather conditions. We analyzed movement patterns to infer calving dates for 747 collared female caribou from seven herds across northern North America, totaling 1255 calving events over a 15‐year period. By relating these events to local weather conditions during the 1‐year period preceding calving, we examined how weather influenced calving timing and the ability of caribou to reach their central calving area. We documented continental‐scale synchrony in calving, but synchrony was greatest within an individual herd for a given year. Weather conditions before and during gestation had contrasting effects on the timing and location of calving. Notably, a combination of unfavorable weather conditions during winter and spring, including the pre‐calving migration, resulted in a late arrival on the calving area or a failure to reach the greater calving area in time for calving. Though local weather conditions influenced calving timing differently among herds, warm temperatures and low wind speed, which are associated with soft, deep snow, during the spring and pre‐calving migration, generally affected the ability of female caribou to reach central calving areas in time to give birth. Delayed calving may have potential indirect consequences, including reduced calf survival. Overall, we detected considerable variability across years and across herds, but no significant trend for earlier calving by caribou, even as broad indicators of spring and snow phenology trend earlier. Our results emphasize the importance of monitoring the timing and location of calving, and to examine how weather during summer and winter are affecting calving and subsequent reproductive success.